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        <center><img src="static/images/logoNiMARE_tutorial.png" width=700></center>
        <p>THIS TUTORIAL IS UNDER CONSTRUCTION</p>
        <p>Welcome to the NiMARE Tutorial! It covers the basic concepts and most common use cases of NiMARE and will teach
            you everything so that you can start creating your own meta-analyses in no time. We recommend that you start with
            the introduction section to familiarize yourself with the tools used in this tutorial and then move on to the
            basic concepts section to learn everything you need to know for your everyday life with NiMARE. The workflow
            examples section shows you a real example of how you can use NiMARE to analyze an actual dataset.
            </p><p>
            All of the notebooks used in this tutorial can be found on <a href="https://github.com">github.com</a>.
            But if you want to have the real experience and want to go through the computations by yourself, we highly
            recommend you to use a Docker container. More about the Docker image that can be used to run the tutorial can be found 
            <a href="notebooks/introduction_docker.html">here</a>.
            This docker container gives you the opportunity to adapt the commands to your liking and discover the flexibility and real power of
            NiMARE yourself.
            </p><p>
            To run the tutorial locally on your system, we will use a <a href="http://www.docker.com/">Docker</a> container. For this you
            need to install Docker and download a docker image that provides you a neuroimaging environment based on a NeuroDebian system,
            with working Python 3 software (including nimare, nibabel, nilearn, numpy, pandas, scipy, seaborn and more).
            </p><p>
            If you do not want to run the tutorial locally, you can also use 
            <a href="https://mybinder.org/v2/gh/neurostuff/NiMARE/master">Binder service</a>. 
            Binder automatically launches the Docker container for you and you have access to all of the notebooks. 
            Note, that Binder provides between 1G and 4G RAM memory, some notebooks from Workflow Examples might not work. 
            All notebooks from Introduction and Basic Concepts parts should work.
           </p><p>
            For everything that isn't covered in this tutorial, check out the <a href="http://nimare.readthedocs.io/en/latest/">main homepage</a>.
            </p>
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      <h2 class="domain-header color01"><a class="domain-title">Introduction</a></h2>
      <div class="pure-g domain-table-container color01">
        <a class="subject-link pure-u-1-3" target="_blank" href="notebooks/introduction_nimare.html">NiMARE</a>
        <a class="subject-link pure-u-1-3" target="_blank" href="notebooks/introduction_showcase.html">NiMARE Showcase</a>
      </div>
      <p>This section is meant as a general overview. It should give you a short introduction to the main topics that
          you need to understand to use NiMARE and this tutorial.</p>

      <h2 class="domain-header color02"><a class="domain-title">Basic Concepts</a></h2>
      <div class="pure-g domain-table-container color02">
        <a class="subject-link pure-u-1-3" target="_blank" href="notebooks/cbma.html">Coordinate-based meta-analysis</a>
        <a class="subject-link pure-u-1-3" target="_blank" href="notebooks/ibma.html">Image-based meta-analysis</a>
        <a class="subject-link pure-u-1-3" target="_blank" href="notebooks/annotation.html">Automated annotation</a>
        <a class="subject-link pure-u-1-3" target="_blank" href="notebooks/database.html">Database extraction</a>
        <a class="subject-link pure-u-1-3" target="_blank" href="notebooks/fca.html">Functional characterization analysis</a>
        <a class="subject-link pure-u-1-3" target="_blank" href="notebooks/parcellation.html">Meta-analytic parcellation</a>
      </div>
      <p>This section will introduce you to all of the key players in NiMARE. Basic concepts that you need to learn to
          fully understand and appreciate NiMARE. Once you understand this section, you will know all that you need to know
          to create any kind of NiMARE workflow.</p>

      <h2 class="domain-header color03"><a class="domain-title">Workflow Examples</a></h2>
      <div class="pure-g domain-table-container color03">
        <a class="subject-link pure-u-1-2" target="_blank" href="notebooks/nidm_pain_meta-analyses.html">Example: Run meta-analyses on 21 pain studies</a>
        <a class="subject-link pure-u-1-2" target="_blank" href="notebooks/generate_ma_maps.html">Example: Generate MA maps</a>
        <a class="subject-link pure-u-1-2" target="_blank" href="notebooks/peaks2maps_demo.html">Example: Peaks to Maps</a>
        <a class="subject-link pure-u-1-2" target="_blank" href="notebooks/save_nidm_to_dset.html">Example: Save NIDM-Results packs to NiMARE dataset</a>
      </div>
      <p>In this section, you will find some practical examples and hands-on that show you how to use NiMARE in a "real world" scenario.</p>

      <h2 class="domain-header color04"><a class="domain-title">Advanced Concepts</a></h2>
      <div class="pure-g domain-table-container color04">
        <a class="subject-link pure-u-1-2" target="_blank" href="notebooks/placeholder1.html">Placeholder 1</a>
        <a class="subject-link pure-u-1-2" target="_blank" href="notebooks/placeholder2.html">Placeholder 2</a>
      </div>
      <p>This section is for more advanced users and NiMARE developers.</p>

      <h2 class="domain-header color05"><a class="domain-title">Useful Resources & Links</a></h2>
      <div class="pure-g domain-table-container color05">
        <a class="subject-link pure-u-1-4" target="_blank" href="notebooks/resources_installation.html">Install NiMARE</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://github.com/neurostuff/NiMARE">NiMARE (main repository)</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="notebooks/resources_resources.html">Useful Resources & Links</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="notebooks/resources_help.html">Where to find Help</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="notebooks/resources_python_cheat_sheet.html">Python Cheat Sheet</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://brainmap.org/sleuth/">Sleuth</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://neurosynth.org/">Neurosynth</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://www.sdmproject.com/">Seed-based d Mapping (SDM)</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://ric.uthscsa.edu/mango/">Mango</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://brainspell.org/">Brainspell</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://metacurious.org/">metaCurious</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://brainmap.org/ale/">GingerALE</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://nidm.nidash.org">Neuroimaging Data Model (NIDM)</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://neurovault.org">NeuroVault</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://obart.brainarchitecture.org/obart/help/">The Online Brain Atlas Reconciliation Tool (OBART)</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://github.com/INCF/HAWG-examples">The Human Atlasing Working Group (HAWG)</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://www.cognitiveatlas.org">Cognitive Atlas</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://www.cogpo.org">Cognitive Paradigm Ontology (CogPO)</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://nipype.readthedocs.io/en/latest/">Nipype</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://github.com/kaczmarj/neurodocker">Neurodocker</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://nipy.org/nibabel/">NiBabel</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://nilearn.github.io/">Nilearn</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://openneuro.org/">OpenNeuro</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://bids-apps.neuroimaging.io">BIDS Apps</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="http://fmriprep.readthedocs.io/en/latest/index.html">fmriprep</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://mriqc.readthedocs.io/en/latest/#">MRIQC</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://www.mindboggle.info/">Mindboggle</a>
        <a class="subject-link pure-u-1-4" target="_blank" href="https://timvanmourik.github.io/Porcupine/">PORcupine</a>
      </div>
      <p>This section will give you helpful links and resources so that you always know where to go to learn more.</p>

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<h2>You want to help with this tutorial?</h2>
<p>Find the github repo of this tutorial under <a href="https://github.com/bilgelm/nimare_tutorial">https://github.com/bilgelm/nimare_tutorial</a>.
    Feel free to send a pull request or leave an <a href="https://github.com/bilgelm/nimare_tutorial/issues">issue</a> with your feedback or ideas.
</p>