Index

Symbols

--end kineticmodel command line option --fwhm denoise command line option kineticmodel command line option --integration_type kineticmodel command line option --json denoise command line option kineticmodel command line option --mask denoise command line option --method denoise command line option --model kineticmodel command line option

--outputdir denoise command line option kineticmodel command line option --petmask kineticmodel command line option --refmask kineticmodel command line option --refroi kineticmodel command line option --start kineticmodel command line option --thresh denoise command line option --weight_by kineticmodel command line option --window_half_size denoise command line option

_

_dataobj (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix attribute) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix attribute)

C

check_frametiming() (in module dynamicpet.temporalobject.temporalobject) clear() (dynamicpet.petbids.petbidsjson.PetBidsJson method) concatenate() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalimage.TemporalImage method) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix method) (dynamicpet.temporalobject.temporalobject.TemporalObject method)

copy() (dynamicpet.petbids.petbidsjson.PetBidsJson method) cumulative_integral() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalobject.TemporalObject method)

D

dataobj (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix property) (dynamicpet.temporalobject.temporalimage.TemporalImage property) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix property) (dynamicpet.temporalobject.temporalobject.TemporalObject property) decay_correct() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) decay_uncorrect() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) denoise command line option --fwhm --json --mask --method --outputdir --thresh --window_half_size PET dynamic_mean() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalimage.TemporalImage method) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix method)

dynamicpet.denoise.hypr module dynamicpet.kineticmodel.srtm module dynamicpet.kineticmodel.suvr module dynamicpet.petbids.petbidsimage module dynamicpet.petbids.petbidsjson module dynamicpet.petbids.petbidsmatrix module dynamicpet.temporalobject.temporalimage module dynamicpet.temporalobject.temporalmatrix module dynamicpet.temporalobject.temporalobject module

E

elem_names (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix attribute) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix attribute) end_time (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix property) (dynamicpet.temporalobject.temporalobject.TemporalObject property)

extract() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalimage.TemporalImage method) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix method) (dynamicpet.temporalobject.temporalobject.TemporalObject method)

F

fit() (dynamicpet.kineticmodel.srtm.SRTMLammertsma1996 method) (dynamicpet.kineticmodel.srtm.SRTMZhou2003 method) (dynamicpet.kineticmodel.suvr.SUVR method) fitted_tacs() (dynamicpet.kineticmodel.srtm.SRTMLammertsma1996 method) (dynamicpet.kineticmodel.srtm.SRTMZhou2003 method) (dynamicpet.kineticmodel.suvr.SUVR method) frame_duration (dynamicpet.petbids.petbidsimage.PETBIDSImage attribute) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix attribute) (dynamicpet.temporalobject.temporalimage.TemporalImage attribute) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix attribute) (dynamicpet.temporalobject.temporalobject.TemporalObject attribute)

frame_end (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix property) (dynamicpet.temporalobject.temporalobject.TemporalObject property) frame_mid (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix property) (dynamicpet.temporalobject.temporalobject.TemporalObject property) frame_start (dynamicpet.petbids.petbidsimage.PETBIDSImage attribute) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix attribute) (dynamicpet.temporalobject.temporalimage.TemporalImage attribute) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix attribute) (dynamicpet.temporalobject.temporalobject.TemporalObject attribute) fromkeys() (dynamicpet.petbids.petbidsjson.PetBidsJson method)

G

get() (dynamicpet.petbids.petbidsjson.PetBidsJson method) get_decay_corrected_tacs() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) get_decay_correction_factor() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) get_decay_uncorrected_tacs() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) get_elem() (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix method) get_frametiming_in_mins() (in module dynamicpet.petbids.petbidsjson) get_hhmmss() (in module dynamicpet.petbids.petbidsjson) get_idx_extract_time() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalobject.TemporalObject method)

get_param_names() (dynamicpet.kineticmodel.srtm.SRTMLammertsma1996 class method) (dynamicpet.kineticmodel.srtm.SRTMZhou2003 class method) (dynamicpet.kineticmodel.suvr.SUVR class method) get_parameter() (dynamicpet.kineticmodel.srtm.SRTMLammertsma1996 method) (dynamicpet.kineticmodel.srtm.SRTMZhou2003 method) (dynamicpet.kineticmodel.suvr.SUVR method) get_radionuclide_halflife() (in module dynamicpet.petbids.petbidsjson) get_weights() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalobject.TemporalObject method)

H

has_gaps() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalobject.TemporalObject method)

hypr_lr() (in module dynamicpet.denoise.hypr)

I

image_maker() (in module dynamicpet.temporalobject.temporalimage) img (dynamicpet.petbids.petbidsimage.PETBIDSImage attribute) (dynamicpet.temporalobject.temporalimage.TemporalImage attribute)

items() (dynamicpet.petbids.petbidsjson.PetBidsJson method)

J

json_dict (dynamicpet.petbids.petbidsimage.PETBIDSImage attribute) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix attribute)

K

keys() (dynamicpet.petbids.petbidsjson.PetBidsJson method) kineticmodel command line option --end --fwhm --integration_type --json --model --outputdir --petmask --refmask --refroi --start --weight_by PET

L

load() (in module dynamicpet.petbids.petbidsimage) (in module dynamicpet.petbids.petbidsmatrix)

M

mean_timeseries_in_mask() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.temporalobject.temporalimage.TemporalImage method) module dynamicpet.denoise.hypr dynamicpet.kineticmodel.srtm dynamicpet.kineticmodel.suvr dynamicpet.petbids.petbidsimage dynamicpet.petbids.petbidsjson dynamicpet.petbids.petbidsmatrix dynamicpet.temporalobject.temporalimage dynamicpet.temporalobject.temporalmatrix dynamicpet.temporalobject.temporalobject

N

num_elements (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix property) (dynamicpet.temporalobject.temporalobject.TemporalObject property) num_frames (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix property) (dynamicpet.temporalobject.temporalobject.TemporalObject property)

num_voxels (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.temporalobject.temporalimage.TemporalImage property)

O

overlap_with() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalobject.TemporalObject method)

P

PET denoise command line option kineticmodel command line option PETBIDSImage (class in dynamicpet.petbids.petbidsimage)

PetBidsJson (class in dynamicpet.petbids.petbidsjson) PETBIDSMatrix (class in dynamicpet.petbids.petbidsmatrix) pop() (dynamicpet.petbids.petbidsjson.PetBidsJson method) popitem() (dynamicpet.petbids.petbidsjson.PetBidsJson method) prep_refine_r1() (dynamicpet.kineticmodel.srtm.SRTMZhou2003 method)

R

read_json() (in module dynamicpet.petbids.petbidsjson)

S

set_parameter() (dynamicpet.kineticmodel.srtm.SRTMLammertsma1996 method) (dynamicpet.kineticmodel.srtm.SRTMZhou2003 method) (dynamicpet.kineticmodel.suvr.SUVR method) set_timezero() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) setdefault() (dynamicpet.petbids.petbidsjson.PetBidsJson method) shape (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix property) (dynamicpet.temporalobject.temporalobject.TemporalObject property)

split() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalobject.TemporalObject method) srtm_model() (in module dynamicpet.kineticmodel.srtm) SRTMLammertsma1996 (class in dynamicpet.kineticmodel.srtm) SRTMZhou2003 (class in dynamicpet.kineticmodel.srtm) start_time (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix property) (dynamicpet.temporalobject.temporalobject.TemporalObject property) SUVR (class in dynamicpet.kineticmodel.suvr)

T

TemporalImage (class in dynamicpet.temporalobject.temporalimage) TemporalMatrix (class in dynamicpet.temporalobject.temporalmatrix) TemporalObject (class in dynamicpet.temporalobject.temporalobject) timediff() (in module dynamicpet.petbids.petbidsjson) timeseries_in_mask() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) (dynamicpet.temporalobject.temporalimage.TemporalImage method) (dynamicpet.temporalobject.temporalmatrix.TemporalMatrix method)

TimingError to_filename() (dynamicpet.petbids.petbidsimage.PETBIDSImage method) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix method) total_duration (dynamicpet.petbids.petbidsimage.PETBIDSImage property) (dynamicpet.petbids.petbidsmatrix.PETBIDSMatrix property) (dynamicpet.temporalobject.temporalobject.TemporalObject property)

U

update() (dynamicpet.petbids.petbidsjson.PetBidsJson method)

update_frametiming_from() (in module dynamicpet.petbids.petbidsjson)

V

values() (dynamicpet.petbids.petbidsjson.PetBidsJson method)

W

write_json() (in module dynamicpet.petbids.petbidsjson)